Amaral R, Fawley KP, Němcová Y, Ševčíková T, Lukešová A, Fawley MW, Santos L, Eliáš M. 2020 Toward modern classification of eustigmatophytes, including the description of Neomonodaceae fam. nov. and three new genera. Journal of Phycology 56 : 630-648.

Samolov E, Mikhailyuk T, Lukešová A, Glaser K, Büdel B, Karsten U. 2019 Usual alga from unusual habitats: Biodiversity of Klebsormidium (Klebsormidiophyceae, Streptophyta) from the phylogenetic superclade G isolated from biological soil crusts. Molecular Phylogenetics and Evolution 133 : 236-255.

Darienko T, Lukešová A, Pröschold T. 2018. The polyphasic approach revealed new species of Chloroidium (Trebouxiophyceae, Chlorophyta). Phytotaxa 372 : 51–66.

Kust A, Urajová P, Hrouzek P, Vu DL, Čapková K, Štenclová L, Řeháková K, Kozlíková E, Lepšová-Skácelová O, Lukešová A, Mareš J. 2018. A new microcystin producing Nostoc strain discovered in broad toxicological screening of non-planktic Nostocaceae (cyanobacteria). Toxicon 150 : 66-73.

Mikhailyuk T, Lukešová A, Glaser K, Holzinger A, Obwegeser S, Nyporko S, Friedl T, Karsten U. 2018. New Taxa of Streptophyte Algae (Streptophyta) from Terrestrial Habitats Revealed Using an Integrative Approach. Protist 169: 406-431.

Bohunická M, Pietrasiak N, Johansen JR, Gómez EB, Hauer T, Gaysina LA, Lukešová A. 2015. Roholtiella, gen. nov. (Nostocales, Cyanobacteria)?A tapering and branching cyanobacteria of the family Nostocaceae. Phytotaxa. 197:84-103.

Škaloud P, Lukešová A, Malavasi V, Ryšánek D, Hrčková K, Rindi F. 2014. Molecular evidence for the polyphyletic origin of low pH adaptation in the genus Klebsormidium (Klebsormidiophyceae, Streptophyta). Plant Ecology and Evolution. 147:333-345.

Řeháková K, Mareš J, Lukešová A, Zapomělová E, Bernardová K, Hrouzek P. 2014. Nodularia (Cyanobacteria, Nostocaceae): A phylogenetically uniform genus with variable phenotypes. Phytotaxa. 172: 235-246.

Johansen JR, Bohunická M, Lukešová A, Hrčková K, Vaccarino MA, Chesarino NM. 2014. Morphological and molecular characterization within 26 strains of the genus Cylindrospermum (Nostocaceae, Cyanobacteria), with descriptions of three new species. Journal of Phycology. 50: 187-202.

Hrouzek P, Lukešová A, Mareš J, Ventura S. 2013. Description of the cyanobacterial genus Desmonostoc gen. nov. including D. muscorum comb. nov. as a distinct, phylogenetically coherent taxon related to the genus Nostoc. Fottea. 13: 201-213.

Fučíková K, Rada JC, Lukešová A, Lewis LA. 2011. Cryptic diversity within the genus Pseudomuriella Hanagata (Chlorophyta, Chlorophyceae, Sphaeropleales) assessed using four barcode markers. Nova Hedwigia. 93: 29-46.

Lukešová A, Johansen JR, Martin MP, Casamatta DA. 2009. Aulosira bohemensis sp. nov.: Further phylogenetic uncertainty at the base of the Nostocales (Cyanobacteria). Phycologia. 48: 118-129.

Zelík P, Lukešová A, Voloshko LN, Štys D, Kopecký J. 2009. Screening for acetylcholinesterase inhibitory activity in cyanobacteria of the genus Nostoc. Journal of Enzyme Inhibition and Medicinal Chemistry.

Papaefthimiou D, Hrouzek P, Mugnai MA, Lukesova A, Turicchia S, Rasmussen U, Ventura S. 2008. Differential patterns of evolution and distribution of the symbiotic behaviour in nostocacean cyanobacteria. International Journal of Systematic and Evolutionary Microbiology. 58: 553-564.